Priming of Solanum Tuberosum in vitro plants with PVY-specific interfering RNAs activates anti-viral resistance

Main Article Content

Authors

M. Sutula

National Scientific Shared Laboratory of NJSC Sarsen Amanzholov East Kazakhstan University, Ust-Kamenogorsk, Kazakhstan, 070004, 55 Kazakhstan

T. Khosnutdinova

National Scientific Shared Laboratory of NJSC Sarsen Amanzholov East Kazakhstan University, Ust-Kamenogorsk, Kazakhstan, 070004, 55 Kazakhstan

Yе. Zhakmanova

National Scientific Shared Laboratory of NJSC Sarsen Amanzholov East Kazakhstan University, Ust-Kamenogorsk, Kazakhstan, 070004, 55 Kazakhstan

G. Dolanbayeva

National Scientific Shared Laboratory of NJSC Sarsen Amanzholov East Kazakhstan University, Ust-Kamenogorsk, Kazakhstan, 070004, 55 Kazakhstan

X. Bogdanova

National Scientific Shared Laboratory of NJSC Sarsen Amanzholov East Kazakhstan University, Ust-Kamenogorsk, Kazakhstan, 070004, 55 Kazakhstan

Ye. Yessilbekova

National Scientific Shared Laboratory of NJSC Sarsen Amanzholov East Kazakhstan University, Ust-Kamenogorsk, Kazakhstan, 070004, 55 Kazakhstan

G. Komekova

Department of Biology of the Graduate School of IT and Technologies of NJSC Sarsen Amanzholov East Kazakhstan University, Ust-Kamenogorsk, Kazakhstan, 070004, 55 Kazakhstan

Zh. Kabatayeva

Department of Biology of the Graduate School of IT and Technologies of NJSC Sarsen Amanzholov East Kazakhstan University, Ust-Kamenogorsk, Kazakhstan, 070004, 55 Kazakhstan

Abstract

Helper component-proteinase (HC-Pro) is a multifunctional suppressor protein synthesized by potato virus Y (PVY), which is able to neutralize the protective mechanisms of RNA interference (RNA-i) in potato plants, thereby causing systemic infection of the host plant and significant damage to the tuber material. This article demonstrates how one of the main functions of HC-Pro, the capture and retention of short interfering RNAs, 21-23 nt in size (siRNA) on the surface of protein subunits, can be used to create virus-resistant potato plants in vitro. The proposed method is based on the selective dissociation of the HC-Pro/siRNA complex from PVY-infected plants and siRNA-priming of healthy plants. Purified preparations of PVY-specific siRNAs were obtained using column gel filtration followed by immunoprecipitation and phenol-chloroform extraction. Injections of siRNA into the leaf plate of virus-free potato microplants, cultivars bred at Amanzholov University, led to a decrease in the accumulation of viral particles in the cytoplasm of plants inoculated with the wild PVY strain and the formation of resistance to PVY for the entire growing season.

Keywords

Solanum tuberosum, HC-Pro, PVY, RISC, siRNA, RNA-interference

Article Details

References

Ghildiyal M., Zamore P.D. Small silencing RNAs: an expanding universe // Nat. Rev. Genet. – 2009. – Vol. 10. – P. 94-108. Crossref.

Bushra T., Idrees A.N., Usman A., Tayyab H. How RNA interference сombat viruses in plants // Functional Genomics. – 2012. – Vol. 6. – P. 113-130. Crossref.

Deleris A, Gallego-Bartolome J, Bao J, Kasschau KD, Carrington JC, Voinnet O. Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science. 2006 Jul 7;313(5783):68-71. doi: 10.1126/science.1128214. Epub 2006 Jun 1. Erratum in: Science. 2016 Jan 22;351(6271). pii: aaf2336. Crossref. PMID: 16741077.

Carthew R.W., Sontheimer E.J. Origins and mechanisms of miRNAs and siRNAs // Cell. – 2009. – Vol. 136. – P. 642-655. Crossref.

Dunoyer P., Himber C., Voinnet O. DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal // Nat. Genet. – 2005. – Vol. 37. – P. 1356-1360. Crossref.

Omarov R., Sparks K., Scholthof H.B. et al. Biological relevance of a stable biochemical interaction between the tombusvirus-encoded P19 and short interfering RNAs // J. Virol., – 2006. – Vol. 80. – P. 3000-3008. Crossref.

Morel J., Godon C., Mourrain P. et al. Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance // Plant Cell. – 2002. – Vol. 14. – P. 629-639. Crossref.

Li F., Ding S. Virus counterdefense: diverse strategies for evading the RNA-silencing immunity // Annu. Rev. Microbiol. – 2006. – Vol. 60. – P. 503-531. Crossref.

Sutula, M.Y., Akbassova, A.Z., Yergaliev, T.M. et al. Endowing plants with tolerance to virus infection by their preliminary treatment with short interfering RNAs. Russ J Plant Physiol 64, 939–945 (2017). Crossref.

Valli, A. A., Gallo, A., Rodamilans, B., López-Moya, J. J., & García, J. A. (2018). The HCPro from the Potyviridae family: an enviable multitasking Helper Component that every virus would like to have. Molecular plant pathology, 19(3), 744–763. Crossref.

Del Toro, F. J., Donaire, L., Aguilar, E., Chung, B. N., Tenllado, F., & Canto, T. (2017). Potato Virus Y HCPro Suppression of Antiviral Silencing in Nicotiana benthamiana Plants Correlates with Its Ability To Bind In Vivo to 21- and 22-Nucleotide Small RNAs of Viral Sequence. Journal of virology, 91(12), e00367-17. Crossref.

Shiboleth, Y. M., Haronsky, E., Leibman, D., Arazi, T., Wassenegger, M., Whitham, S. A., Gaba, V., & Gal-On, A. (2007). The conserved FRNK box in HC-Pro, a plant viral suppressor of gene silencing, is required for small RNA binding and mediates symptom development. Journal of virology, 81(23), 13135–13148. Crossref.

Rawlings, R. A., Krishnan, V., & Walter, N. G. (2011). Viral RNAi suppressor reversibly binds siRNA to outcompete Dicer and RISC via multiple turnover. Journal of molecular biology, 408(2), 262–276. Crossref.

Murashige T. and Skoog F. (1962). A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15(3): 473-497.

Coskun O. Separation techniques: Chromatography. North Clin Istanb. 2016 Nov 11;3(2):156-160. Crossref. PMID: 28058406; PMCID: PMC5206469.

Zumbo, P. Phenol-chloroform extraction. Weill Cornell Medical College, New York, NY, 1979.

Laemmli, U. Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4. Nature 227, 680–685 (1970). Crossref.

Waritani, T., Chang, J., McKinney, B., Terato, K. An ELISA protocol to improve the accuracy and reliability of serological antibody assays. MethodsX, 4, 2017, 153-165. ISSN 2215-0161, Crossref.

The recipes calculator for thermodynamically correct buffers, R. Beynon from the University of Liverpool. URL.

Plisson C., Drucker M., Blanc S., German-Retana S., Le Gall O., Thomas D., Bron P. Structural characterisation of HC-Pro, a plant virus multifunctional protein // J. Biol Chem. 2003. -Vol. 278(26). –P. 23753-61. Crossref.

Lakatos, L., Csorba, T., Pantaleo, V., Chapman, E. J., Carrington, J. C., Liu, Y. P., Dolja, V. V., Calvino, L. F., López-Moya, J. J., & Burgyán, J. (2006). Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. The EMBO journal, 25(12), 2768–2780. Crossref.