USE IRAP AND IPBS MOLECULAR MARKERS FOR GENETIC ANALYSIS OF WHEAT VARIETIES

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Authors

D.S. Tagimanova

National Center for Biotechnology, 13/1  Sh. Valikhanov str., Astana, 010000, Kazakhstan

A. Alzhanova

National Center for Biotechnology, 13/1  Sh. Valikhanov str., Astana, 010000, Kazakhstan

O.N. Khapilina

National Center for Biotechnology, 13/1  Sh. Valikhanov str., Astana, 010000, Kazakhstan

R.N. Kalendar

National Center for Biotechnology, 13/1  Sh. Valikhanov str., Astana, 010000, Kazakhstan

Abstract

Improving the efficiency of the breeding process is now greatly achieved by using molecular markers. Such an approach to the analysis of the breeding material allows the early stages breeding to identify variation at the genetic level, to select variants breeding lines with the necessary features to analyze the DNA of plants. Methods of molecular marking offer great opportunities to improve the efficiency of the breeding, problem solving somaclonal variability.

Molecular markers can detect molecular genetic changes in the tissue level of individual plants, and at the cellular level. Each type of molecular markers has its own features, limitations and field of application that must be considered when choosing the most reliable and simple methods of genetic certification of wheat varieties.

Molecular markers are now widely used to assess the intraspecific diversity of plants, allow the identification of varieties, species, help secure copyrights breeders allow to study the phylogenetic relationships. Many molecular markers are highly informative, well-reproduced, reliable in determining the individual characteristics of the genotype.

Selection of molecular genetic markers to create a genetic passport, determine the genealogical relationships between varieties, as well as marking the major genes of agronomic traits is an urgent task breeding of crop plants.

Keywords

wheat, retrotransposons molecular markers, polymorphisms, DNA, amplification, primer

Article Details

References

Trudi po pricladnoi botanice, genetice i seleksii [Bulletin of applied botany, genetics and breeding], 1958, vol. 33, no 1, pp. 133-140.

Vavilov N.I. Nauchn osnov seleksii pshenisi [Scientific bases of wheat breeding], Agricultural pub, 1935, vol. 1.2

FAOSTAT. Food and Agriculture Organization of the United Nations Statistics Division: Food and Agriculture Organization of the United Nations Statistics Division, 2014. URL: URL.

Kalendar R., Glazko V. Types of molecular-genetic markers and their application. Physiology and Biochemistry of cultural plants, 2002, vol. 34, no. 4, pp. 279-296.

Kalendar R. The use of retrotransposon-based molecular markers to analyze genetic diversity. Ratarstvo i povrtarstvo, 2011, vol. 48, no. 2, pp. 261-274. DOI: 10.5937/ratpov1102261K.

Kalendar R., Flavell A.J., Ellis T.H., et al. Analysis of plant diversity with retrotransposon-based molecular markers. Heredity, 2011, vol. 106, no. 4, pp. 520-30. DOI: 10.1038/hdy.2010.93.

Boronnikova S.V., Kalendar R.N. Using IRAP markers for analysis of genetic variability in populations of resource and rare species of plants. Russian Journal of Genetics, 2010, vol. 46, no. 1, pp. 36-42. PMID:20198878.

Kalendar R., Schulman A.H. Transposon-based tagging: IRAP, REMAP, and iPBS. Methods Mol Biol, 2014, vol. 1115, pp. 233-55. doi: 10.1007/978-1-62703-767-9_12.

Kalendar R., Schulman A. IRAP and REMAP for retrotransposon-based genotyping and fingerprinting. Nature Protocols, 2006, vol. 1, no 5. pp. 2478-2484. PMID: 17406494.

Brik A.F., Kalendar R.N., Stratula O.P., et al. IRAP-and REMAP-analyses of barley varieties of Odessa breeding. Cytology and Genetics, 2006, vol. 40, no. 3, pp. 24-33. PubMed ID 16933849.

Balážová Z.T., Gálová Z., Kalendar R., Schulman A.H., Stratula O., Chňapek M. Genetic diversity of triticale cultivars based on microsatellite and retrotransposon-based markers. The Journal of Microbiology, Biotechnology and Food Sciences, 2014, vol. 3, no. 2, рр. 58-60.

Trebichalsky A. K.R., Schulman A., Stratula O., Galova Z., Balazova Z., Chnapek M. Detection of genetic relationships among spring and winter Triticale (x Triticosecale Witt.) and rye cultivars (Secale cereale L.) by using retrotransposon-based marker. Czech Journal of Genetics and Plant Breeding, 2013, vol. 49, no. 4, pp. 171-174.

Leigh F., Kalendar R., Lea V., et al. Comparison of the utility of barley retrotransposon families for genetic analysis by molecular marker techniques. Molecular Genetics and Genomics, 2003, vol. 269, no. 4, pp. 464-474. DOI 10.1007/s00438-003-0850-2.

Kalendar R., Lee D., Schulman A. FastPCR Software for PCR, In Silico PCR, and Oligonucleotide Assembly and Analysis, DNA Cloning and Assembly Methods V. 1116. Valla S., Lale R.: Humana Press, 2014, pp. 271-302. DOI: 10.1016/j.ygeno.2011.04.009.